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CardamomOT
CardamomOT

User guide

  • Installation
  • Quick Start
  • Advanced Features

Worked examples

  • Worked Examples
  • Semrau et al. (2017) — Mouse ESC differentiation
  • Kameneva et al. (2021) — Human sympathoadrenal development
  • Schiebinger et al. (2019) — iPSC reprogramming with stimulus schedule

Reference

  • API Reference
    • CardamomOT
      • CardamomOT.config
      • CardamomOT.inference
        • CardamomOT.inference.degradations
        • CardamomOT.inference.mixture
        • CardamomOT.inference.network
        • CardamomOT.inference.network_final
        • CardamomOT.inference.pretreatment
        • CardamomOT.inference.proliferations
        • CardamomOT.inference.simulations
        • CardamomOT.inference.trajectory
      • CardamomOT.model
        • CardamomOT.model.base
      • CardamomOT.tools
        • CardamomOT.tools.plot_networks
        • CardamomOT.tools.plot_results_kov
        • CardamomOT.tools.plot_results_sim
  • CardamomOT
    • CardamomOT.config
    • CardamomOT.inference
      • CardamomOT.inference.degradations
      • CardamomOT.inference.mixture
      • CardamomOT.inference.network
      • CardamomOT.inference.network_final
      • CardamomOT.inference.pretreatment
      • CardamomOT.inference.proliferations
      • CardamomOT.inference.simulations
      • CardamomOT.inference.trajectory
    • CardamomOT.model
      • CardamomOT.model.base
    • CardamomOT.tools
      • CardamomOT.tools.plot_networks
      • CardamomOT.tools.plot_results_kov
      • CardamomOT.tools.plot_results_sim
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CardamomOT.model¶

Main interface for the package.

Submodules¶

  • CardamomOT.model.base
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Copyright © 2026, Elias Ventre, Yann Mauge
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